Basic Information
VIS ID
TVIS44016413
Fusion event
HTLV-1-chr5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q34
Reference genome
GRCh37/hg19
Start
163327860/163900854 (Hg38)
End
163327860/163900854 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/3415404; hsa-mir-103a-1/Downstream/4264991;
Nearest TSS
ENST00000502646/Upstream/383637; ENST00000522426/Downstream/308777;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/394914, chr5-CpG: 17/Downstream/3077625
Nearby gene
MAT2B(+381501) ;
Upstream sequence
atttcaataccaatttctaaaactaacgaagcaagcaagcaaacaaacaaacagacaaaaataatagaatatcccaaacgctgtaggagaactacaaaag
Downstream sequence
gtgtaacaaatgcataaggggaatatcataaggagaagaaagagacaaagaaacaagaaatatatacaacaataatgactgaaaattcccctaaattaat
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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