Basic Information
VIS ID
TVIS44016478
Fusion event
HTLV-1-LOC102467080 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
54038761/54742933 (Hg38)
End
54038761/54742933 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA5H
Target gene
LOC102467080
Nearest miRNA
hsa-mir-10397/Upstream/791334; hsa-mir-103a-1/Downstream/427599;
Nearest TSS
ENST00000502646/Upstream/225068; ENST00000512089/Downstream/214913;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/223457, chr5-CpG: 84/Downstream/140602
Upstream sequence
gtttggtttgctcccggctcctgtcctgtttttcctgctctttcctggacttcctatgggagcacttccttcacaattcacgtgcacatagcccttgtca
Downstream sequence
aggtctacttctggaagcttcaatctaagccaTAGTAATCATCCTTGCTCAAGGAGATTTTTCTCCAGACTCCAATAAAACAGAAGAAACAGCAGTCTCC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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