Basic Information
VIS ID
TVIS44016487
Fusion event
HTLV-1-SHISAL2B integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
63986179/64690352 (Hg38)
End
63986179/64690352 (Hg38)
Orient
+
Location type
UTR5
Target gene
SHISAL2B
Nearest miRNA
hsa-mir-10397/Upstream/4986649; hsa-mir-103a-1/Downstream/7479115;
Nearest TSS
ENST00000502646/Upstream/44; ENST00000506473/Downstream/90;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/183574, chr5-CpG: 78/Downstream/10
Upstream sequence
ACATGTCCCACCTCTTCTTTTTTCCCTCTGGAGAAAGCTCTTTCTGGCATCGAGTGGGGACAGCTAAGGTCTCCAGGCTGCTGATGAAGTGAGGGAAAGT
Downstream sequence
GGAGGAGAGTCGGCGCCGAGATGGGCGGATAAAAGGAGCGACCGCTCAGCAGCGAGAGGGAGAGGCGAGAGTAAGGCGCCCAGACACCATGTGGACAAGG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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