Basic Information
VIS ID
TVIS44016538
Fusion event
HTLV-1-chr6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q21
Reference genome
GRCh37/hg19
Start
108169101/107847897 (Hg38)
End
108169101/107847897 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA6F
Nearest miRNA
hsa-mir-10398/Upstream/1063677; hsa-mir-1202/Downstream/11221150;
Nearest TSS
ENST00000381078/Upstream/23580; ENST00000606070/Downstream/29503;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/212408, chr6-CpG: 32/Downstream/295
Nearby gene
SEC63(-19859) ;
Upstream sequence
ggaaagctttttcaaagtgtaagtacatcccaaatacttcatgggacatgtttatactaaaaattcatttgttgtttatctgaaatgcaaatttaactgg
Downstream sequence
gcatcttttttggggtgtgctggatctggagaccctCTTTCTGCCAGAACGCACGGGCTGTGTGAGGGGCGTCCTACTGAGGGTCGGGCTTGATGGCCCG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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