Basic Information
VIS ID
TVIS44016554
Fusion event
HTLV-1-LOC101928096 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q22.32
Reference genome
GRCh37/hg19
Start
126445831/126124685 (Hg38)
End
126445831/126124685 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC101928096
Nearest miRNA
hsa-mir-10398/Upstream/6109428; hsa-mir-1202/Downstream/359946;
Nearest TSS
ENST00000381078/Upstream/117843; ENST00000444229/Downstream/52508;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/137900, chr6-CpG: 27/Downstream/215304
Nearby gene
MIR5695(No orient, 2069)
Upstream sequence
cttcaaaaagtgtgcatttttgtctgttctctcaggcctgtcactGGCATAAGAACATTTTGAACATGGCTGCCAGATGATGAGAGGCTTGTAGATCAGA
Downstream sequence
GTGGAGTCCACATAGTCACCCTAGCCAAAGCCAGCCTAGATCAACCAACCAATGTTCCAGCATGTGAGCATGCGCAGACAGGATCCACCTCCTAGCCAAT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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