Basic Information
VIS ID
TVIS44016563
Fusion event
HTLV-1-chr6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
133142133/132820994 (Hg38)
End
133142133/132820994 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/705731; hsa-mir-1202/Downstream/2158344;
Nearest TSS
ENST00000381078/Upstream/6425; ENST00000434443/Downstream/267086;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/6304, chr6-CpG: 138/Downstream/419954
Nearby gene
RPS12(+3430) ;
Upstream sequence
TAGTCAAGGAATAAGGTCAGTAGCCATCACCACTCCAGGAAAAGGATGGGACAGGCTGATGGCAGAGAAGGGTACAGCATTGTCCTCCCAGCCAGGCATT
Downstream sequence
TTCAGAAAGGTCAATCCATGTGCTAGAAGAACAACTTCAGCAGTAAGTCCTAGCAAAAGAGATGGCGTGGTTAAGGAGGTGACCTGGGGAGAGGCCACCA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate