Basic Information
VIS ID
TVIS44016578
Fusion event
HTLV-1-MIR3163 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q25.2
Reference genome
GRCh37/hg19
Start
152501236/152180101 (Hg38)
End
152501236/152180101 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
MIR3163
Nearest miRNA
hsa-mir-10398/Upstream/1077325; hsa-mir-1202/Downstream/2673259;
Nearest TSS
ENST00000381078/Upstream/638; ENST00000412161/Downstream/5310;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/371465, chr6-CpG: 26/Downstream/122043
Upstream sequence
aaaagataaaatgtttaaaatataCTGCTCCTTTGACAGGAAAGTAATTGTGAGTAAAGCCACCTTCTGTACCTGTGAAAAGTACACATAAGCCTTATGA
Downstream sequence
AGAATGAAAACCTAAGTAGCCATGCATTCCATACCTTCTTGAGCTTCTCTATCATTTCTTCAATGAGAATGTCTCCATTCTGAGAAACTTTGCTTTCCAT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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