Basic Information
VIS ID
TVIS44016591
Fusion event
HTLV-1-chr6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q27
Reference genome
End
164809669/164388636 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
Nearest miRNA
hsa-mir-10398/Upstream/5623883; hsa-mir-1913/Downstream/2120718;
Nearby gene
MEAT6(No orient, 397197)
Upstream sequence
agatctgTGGCTATTCATTGTTTCATCTGACCCTTATTCGTGGCGAATTGTTTGTTATGtatttataattttaaaaaattttGAATACATCTTCCAGATT
Downstream sequence
ACCCAGGTTTGTAGTACACTTGAAGAATGTGTACATTGACTTTCttgaggaaacctttctctagaaaagatttgcttttgcttctaccgtgtgcttaaga
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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