Basic Information
VIS ID
TVIS44016616
Fusion event
HTLV-1-chr6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.31
Reference genome
GRCh37/hg19
Start
34714107/34746330 (Hg38)
End
34714107/34746330 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA6H
Nearest miRNA
hsa-mir-1236/Upstream/505594; hsa-mir-10398/Downstream/724178;
Nearest TSS
ENST00000381078/Upstream/49385; ENST00000474635/Downstream/11076;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/49337, chr6-CpG: 24/Downstream/10956
Nearby gene
SNRPC(+10764) ;
Upstream sequence
GTCTTAGTGTTGTTCTCATTTGCCCAGGCTAGGTGGAGAAAGCTTTGTCTCCAGATACCCATGGCCTTGGAAAGCAGCAGCTAGGTCACCTCCCAAGCGA
Downstream sequence
TTTCACTTGCAGGGTAGAGTGGGATGAAGATTGCCAGCCACAGTCATCCCAGCCACAGCTATGTTTACACCTACCTGGGAGGCCTGGCGTGAGCTTTTAC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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