Basic Information
VIS ID
TVIS44016701
Fusion event
HTLV-1-chr7 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
112638486/112998431 (Hg38)
End
112638486/112998431 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10525/Upstream/10526900; hsa-mir-10399/Downstream/1654914;
Nearest TSS
ENST00000635602/Upstream/2797; ENST00000495516/Downstream/87658;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/207920, chr7-CpG: 223/Downstream/1086438
Nearby gene
HRAT17(No orient, 2788)
Upstream sequence
AGCATAAGTAATGATGTTCTTTGAAAAGGAAGTAATAATTGGTAAAAGAGGTTGGAGATTAGCTGTGGATGTCAATTTTGTGGTATTTAAAATTGCTTTT
Downstream sequence
Cacagcatggtaatggtacaaaaacagacacatagaccaatgggacagaatagagagcccagaagtaaggccacatatctacaaccatctaatctttgac
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate