Basic Information
VIS ID
TVIS44016714
Fusion event
HTLV-1-LOC101928283 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q31.33
Reference genome
GRCh37/hg19
Start
124907372/125267318 (Hg38)
End
124907372/125267318 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC101928283
Nearest miRNA
hsa-mir-10525/Upstream/8246999; hsa-mir-10399/Downstream/1790770;
Nearest TSS
ENST00000635602/Upstream/3027; ENST00000453278/Downstream/164029;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/337173, chr7-CpG: 237/Downstream/1983928
Upstream sequence
tttcacaagatctgatggttttacaaggggtatttccccctttgctcggcacttctccttcgtgccatcatgtgaagaaggacatgtttccttccagttc
Downstream sequence
caccatgattttaagtttcctgaggcctccccagccatgctgaactgtgagccaattaaacctctttccctatacattatccagtctcgggtatgtcttt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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