Basic Information
VIS ID
TVIS44016731
Fusion event
HTLV-1-chr7 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
14037401/13997776 (Hg38)
End
14037401/13997776 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-339/Upstream/6930731; hsa-mir-10399/Downstream/4129444;
Nearest TSS
ENST00000635602/Upstream/6351; ENST00000412014/Downstream/271425;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/6188, chr7-CpG: 17/Downstream/2401721
Nearby gene
ETV1(-6351) ;
Nearest cancer related gene
ETV1(OG, -6351) ;
Upstream sequence
cagcgcccatctctgctgctttcatgggcggtcattgagtgtctgcagcttttccaggcacacaatccaagctggtaatggatctaacattttgaggtct
Downstream sequence
ggaggactgtggtccacttctcatggctccactaggcagtgccctagtaggaactttgtgtgggggctctgaccccacatttcccttcttcattgcctta
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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