Basic Information
VIS ID
TVIS44016747
Fusion event
HTLV-1-chr7 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q36.3
Reference genome
GRCh37/hg19
Start
157096023/157303329 (Hg38)
End
157096023/157303329 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA7I
Nearest miRNA
hsa-mir-10399/Upstream/5869690; hsa-mir-153-2/Downstream/271007;
Nearest TSS
ENST00000635602/Upstream/20643; ENST00000439402/Downstream/32052;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/2488, chr7-CpG: 131/Downstream/33066
Nearby gene
DNAJB6(+33687) ;
Upstream sequence
CCTTCtttttttgtttgtttgtttgtttgtttgttttgagacggagtctccctctgtctcccaggctggagtgcagtggcgcaatctcagctcactgcaa
Downstream sequence
gctccgcctcctggattcaggccattctcctgcctcagcctcccgagtagctgggactacaggcacctgccaccacgcccagctaattttttcgtatttt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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