Basic Information
VIS ID
TVIS44016768
Fusion event
HTLV-1-LOC105375304 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
26430054/26390434 (Hg38)
End
26430054/26390434 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105375304
Nearest miRNA
hsa-mir-1183/Upstream/440448; hsa-mir-10399/Downstream/779046;
Nearest TSS
ENST00000635602/Upstream/13733; ENST00000449537/Downstream/8159;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/13163, chr7-CpG: 113/Downstream/7673
Nearby gene
LOC441204(+13054) ;
Upstream sequence
CATCTTTATTTCTGACTTGTTACAAACCATTAACTAGTTTCCAGGTTTCAATGTCCTGGCTACTTTTGACTAGTAAGTCATTTGGCATAACAAGGTTTCC
Downstream sequence
CTTTATCTTCTTGCTAAAGAAAATCTCTACAAGAAATGATCAGTGTTCCAATTTTTATGAATCCTAGCAGATAGGAAGTGCCTGTCATCGGATGCGAGGT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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