Basic Information
VIS ID
TVIS44016856
Fusion event
HTLV-1-chr8 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
108723009/107710781 (Hg38)
End
108723009/107710781 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12123/Upstream/3226316; hsa-mir-10400/Downstream/4932712;
Nearest TSS
ENST00000518652/Upstream/212726; ENST00000520037/Downstream/278774;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/1052418, chr8-CpG: 92/Downstream/371846
Nearby gene
RSPO2(-188535) ;
Upstream sequence
acctctaggggagcatacagatgggcaggctgtggggctccggtcccacagcagtgtccaggggtgaatgtttgcagctcctgaagccccagtgggcgtg
Downstream sequence
tgttatagtgtgctctcttagtttgccatctataggctgctggtgttaaccagctcaattagatccccttcgttatcacaaggacagaggaatttctgta
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate