Basic Information
VIS ID
TVIS44016875
Fusion event
HTLV-1-chr8 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.13
Reference genome
GRCh37/hg19
Start
126400359/125388117 (Hg38)
End
126400359/125388117 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA8C ; FRA8E
Nearest miRNA
hsa-mir-12123/Upstream/566059; hsa-mir-10400/Downstream/2407845;
Nearest TSS
ENST00000518652/Upstream/25091; ENST00000521778/Downstream/42204;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/296237, chr8-CpG: 216/Downstream/41112
Nearby gene
NSMCE2(+20992) ;
Upstream sequence
gaggcatgagaatcacttgaacccaggaggcagaggctgcagtgagccaagactgcatcactgcactccagcctgggcaacagagtgagactctgtctca
Downstream sequence
gaacaaaacaaGTAGATGTTAGTACTTGGTTCATTTAAGAAACAATGGAGGAAAAAAAAAAAAGAGAGACAGACTCTCACGTTTAAAGAGAAAAAAACCA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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