Basic Information
VIS ID
TVIS44016896
Fusion event
HTLV-1-chr8 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
143861460/142780044 (Hg38)
End
143861460/142780044 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA8D
Nearest miRNA
hsa-mir-1204/Upstream/603626; hsa-mir-10400/Downstream/953039;
Nearest TSS
ENST00000518652/Upstream/1820; ENST00000510610/Downstream/5330;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/2049, chr8-CpG: 16/Downstream/18134
Nearby gene
LYNX1(-2196) ;
Upstream sequence
agatggagagagatatactatgctaacaccaattaaaagaacacagacatgactacgtcaatatcaaagtaggtttaaagcaaagactataatcagaaat
Downstream sequence
aaagaggagcattactggccaggtgtagtggctctcatctgcaatcccagcactttgggaggctgaggtgggaggattgcttgaggccaggagtttgaga
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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