Basic Information
VIS ID
TVIS44016947
Fusion event
HTLV-1-LOC101929268 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
49502681/48590121 (Hg38)
End
49502681/48590121 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC101929268
Nearest miRNA
hsa-mir-124-1/Upstream/5693846; hsa-mir-10400/Downstream/13124667;
Nearest TSS
ENST00000518652/Upstream/33680; ENST00000430626/Downstream/280;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/33686, chr8-CpG: 37/Downstream/145022
Upstream sequence
TGTGGCCAGTTGAGAAGTTCCCAAAACATCACTATTGAAGTAGAGGGAACTGAGAGCATAGCATGGTGTGTGTGATTTACTCCTTTAGGATGGCTTAGAC
Downstream sequence
CCATGATTGCATCTGTTCTTGATTATGGCGCCGCTTTTAACCACAGAGATGACTCAGCACTGGAAGGTTAGCTGTGCTGCCCAAGGTCACACAGCAACAT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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