Basic Information
VIS ID
TVIS44016956
Fusion event
HTLV-1-LOC107984125 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
55734646/54822086 (Hg38)
End
55734646/54822086 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107984125
Nearest miRNA
hsa-mir-124-1/Upstream/11925811; hsa-mir-10400/Downstream/6892702;
Nearest TSS
ENST00000518652/Upstream/206019; ENST00000522559/Downstream/280303;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/200613, chr8-CpG: 222/Downstream/279010
Nearby gene
RP1(+191252) ;
Upstream sequence
cattggctaagctgcaaagaccatcatcataatagtgataataatCATAGTAGTTAATTGAAACAAGTTGAGACTGTGAAAAGCCATGCATTAGTAATTA
Downstream sequence
TATTTGAAAGAGAAAAGTGAATATAAAGTGTACAAAATGTAGTTGTAATACAGAGAAGGGtatatataatagtttaattatttattagttttaacaaata
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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