Basic Information
VIS ID
TVIS44016984
Fusion event
HTLV-1-chr8 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q21.13
Reference genome
End
77914218/77001982 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/35132; hsa-mir-10400/Downstream/2330206;
Nearby gene
PEX2(-938) ;
Upstream sequence
TTGAAATTGTTTAAAATAAGTTCTAGATTTTAATGTTTAACCTGTAGATACAGTATACCTTCTTAATTTTCCCATGAGCTGGTGAGCTGAGGTTCCAGGG
Downstream sequence
AAGCTTTGTTTCCAGTTTTTTAAAGATATATTTATTTTTCattcatttatttaacaaaagctttctgaggcccgggagttttgctaggcagtgttgataa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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