Basic Information
VIS ID
TVIS44017024
Fusion event
HTLV-1-LINC01388 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
114088/114088 (Hg38)
End
114088/114088 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC01388
Nearest miRNA
hsa-mir-1302-9/Upstream/83807; hsa-let-7a-1/Downstream/4736209;
Nearest TSS
ENST00000422679/Upstream/334; ENST00000469197/Downstream/4116;
Nearest CpG islands
chr9-CpG: 211/Target, None/Upstream, None/Downstream
Nearby gene
FOXD4(-2143) ;
Upstream sequence
AGGCCCAGGCGGGAAAGGCGGCGAGTGGCGTCAGCGGTTCCGAAAGCAAACCTGGCCCGGTGCTACTGCCCGAGGGTCGCCGGGCGCGTTTCCTAATTCC
Downstream sequence
CCCGAGTCTGGAAAACGGAGACTTCCGTAGCGTCTTCTTCAGTGCGTGCTGCGAGTGCTGAAGGAGGACCCGGTGCCTGGACGACCCGGAGCAGGGGAAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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