Basic Information
VIS ID
TVIS44017026
Fusion event
HTLV-1-chr9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q33.2
Reference genome
GRCh37/hg19
Start
123150233/120387955 (Hg38)
End
123150233/120387955 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/142905; hsa-mir-12126/Downstream/1732127;
Nearest TSS
ENST00000422679/Upstream/414861; ENST00000437707/Downstream/2322;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/1018019, chr9-CpG: 40/Downstream/106804
Nearby gene
CDK5RAP2(-914) ;
Upstream sequence
GCTTGCGAAAGGCACTCCAGTGACATTATGGCTCAATCTGAGTTTTCACACACTGGTACGTATTCTACCGAGGTACACCTGTGCAAATATTTCTCAGGAA
Downstream sequence
GAGCACAGATGGCAGGAACCGAAGCAGAAAGGGTCTGTACTGCCCACTTCCTCCGCCCCTCTCTTAATGGATGGGGAGACAGGCAAAGTGGCATGAGGCC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate