VISDB Viral Integration Site DataBase

VIS ID

TVIS44017032

Fusion event

HTLV-1-GAPVD1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr9

Cytoband

q33.3

Reference genome

Start

End

128068987/125306708 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-34a-5p ; hsa-mir-98-5p ; hsa-mir-21-5p ; hsa-let-7b-5p ; hsa-mir-30c-5p ; hsa-mir-4280 ; hsa-mir-3192-5p ; hsa-mir-6510-3p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-6888-3p ; hsa-mir-196a-3p ; hsa-mir-661 ; hsa-mir-873-3p ; hsa-mir-4522 ; hsa-mir-3120-5p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-3187-5p ; hsa-mir-5189-5p ; hsa-mir-1285-3p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-939-3p ; hsa-mir-3664-5p ; hsa-mir-302c-5p ; hsa-mir-6873-3p ; hsa-mir-3143 ; hsa-mir-492 ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-6845-3p ; hsa-mir-136-5p ; hsa-mir-197-3p ; hsa-mir-6809-3p ; hsa-mir-3692-3p ; hsa-mir-4753-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-6802-3p ; hsa-mir-6886-3p ; hsa-mir-942-5p ; hsa-mir-6754-3p ; hsa-mir-412-3p ; hsa-mir-1236-3p ; hsa-mir-6515-3p ; hsa-mir-1224-3p ; hsa-mir-140-3p ; hsa-mir-129-2-3p ; hsa-mir-129-1-3p ; hsa-mir-6779-3p ; hsa-mir-4687-5p ; hsa-mir-6516-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-455-3p ; hsa-mir-6807-5p ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-7847-3p ; hsa-mir-6880-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-6499-3p ; hsa-mir-767-5p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-6134 ; hsa-mir-1185-5p ; hsa-mir-1224-5p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3122 ; hsa-mir-3165 ; hsa-mir-3605-5p ; hsa-mir-363-5p ; hsa-mir-3656 ; hsa-mir-3679-5p ; hsa-mir-3913-5p ; hsa-mir-3915 ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-450a-1-3p ; hsa-mir-4689 ; hsa-mir-5186 ; hsa-mir-6513-5p ; hsa-mir-6745 ; hsa-mir-6788-5p ; hsa-mir-6858-5p ; hsa-mir-6888-5p ; hsa-mir-887-5p

Nearest miRNA

hsa-let-7a-1/Upstream/612910; hsa-mir-12126/Downstream/2383979;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/44391, chr9-CpG: 110/Downstream/101178

Upstream sequence

cagcttcccaagtagctgggactgcaggtgcgcgccaccacacctggctaattttggtatttttcatagagacaaggttttgccctgttgccccaagtgg

Downstream sequence

ttttgaacttccgagctcaagcagtccacccaccttggcctcccaaagtgctgggattgcaggcatgcactaccacacccagcTCCAAGATCTTAGACTA