Basic Information
VIS ID
TVIS44017043
Fusion event
HTLV-1-LOC102723803 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
1332535/1332535 (Hg38)
End
1332535/1332535 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC102723803
Nearest miRNA
hsa-mir-1302-9/Upstream/1302254; hsa-let-7a-1/Downstream/3517762;
Nearest TSS
ENST00000422679/Upstream/277911; ENST00000637134/Downstream/647755;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/280295, chr9-CpG: 266/Downstream/682296
Nearby gene
DMRT2(+274981) ;
Upstream sequence
ATGATTTCTTGGTCATTTCCTACTTGCATTTCTTGCTCTTACTTCCAGGTGATTCACCACTGACATTGCATTGACTTTGTTAAGGTTATCTGTGGGTAAC
Downstream sequence
ATACCCACAGTAGGAGCCTGGCAGTCTCAGAAAGTTGGCTCTCATTGGCTGCTGCATCTTGTTGGCAGAGGAAAGGGGAAAGGGGTGGGGACAGAGTGac
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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