Basic Information
VIS ID
TVIS44017049
Fusion event
HTLV-1-LOC107987141 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.3
Reference genome
GRCh37/hg19
Start
138799933/135908087 (Hg38)
End
138799933/135908087 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107987141
Nearest miRNA
hsa-let-7a-1/Upstream/1057280; hsa-mir-126/Downstream/611481;
Nearest TSS
ENST00000422679/Upstream/275; ENST00000617896/Downstream/36976;
Nearest CpG islands
chr9-CpG: 213/Target, None/Upstream, None/Downstream
Nearby gene
CAMSAP1(-928) ;
Upstream sequence
TCGTCCCACCTCAGCCACAGCCCGGCCCCCTGGCCGGCCGAGGTCTCGCCGCCGGCGCCCTGGGGACCTCGTGGGTGTGGCCGGCGGCGACCTCGGCAGG
Downstream sequence
CGACAGCCCAGCAGACGGGCACCAGGTGGACGTGCCAGTCTCCAGACCCCCGTCCCGGTGCAGGGAAGGTGGGCGTTTGGACCCCTGAGGCAGAAACAGG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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