Basic Information
VIS ID
TVIS44017052
Fusion event
HTLV-1-LOC101929507 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p23
Reference genome
GRCh37/hg19
Start
14004894/14004895 (Hg38)
End
14004894/14004895 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC101929507
Nearest miRNA
hsa-mir-101-2/Upstream/7996991; hsa-let-7a-1/Downstream/4568411;
Nearest TSS
ENST00000422679/Upstream/76924; ENST00000442260/Downstream/21076;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/681544, chr9-CpG: 242/Downstream/308058
Nearby gene
LINC00583(No orient, 59288)
Upstream sequence
tatgatccatttttgacttgcacccacatgttgagctgattcacacattaaccaaaattgatcttttcctctgctttcagcttctgttggagatctggca
Downstream sequence
tctctttcaggatttcaggttcagaaaccatctgaggtctagagactgggcaaggggcttggctgctgtgttcagccttttgatcatccatctttgattt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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