VISDB Viral Integration Site DataBase

VIS ID

TVIS44017072

Fusion event

HTLV-1-B4GALT1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr9

Cytoband

p21.1

Reference genome

Start

End

33156548/33156550 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-155-5p ; hsa-mir-128-3p ; hsa-mir-122-5p ; hsa-mir-1-3p ; hsa-mir-16-5p ; hsa-mir-484 ; hsa-mir-15b-5p ; hsa-mir-18a-5p ; hsa-mir-185-5p ; hsa-mir-4306 ; hsa-mir-1207-5p ; hsa-mir-4763-3p ; hsa-mir-550a-5p ; hsa-mir-550a-3-5p ; hsa-mir-1271-3p ; hsa-mir-550b-2-5p ; hsa-mir-6889-3p ; hsa-mir-125a-5p ; hsa-mir-4668-5p ; hsa-mir-766-5p ; hsa-mir-4533 ; hsa-mir-6722-3p ; hsa-mir-1909-3p ; hsa-mir-4490 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-mir-4511 ; hsa-mir-582-3p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-5688 ; hsa-mir-495-3p ; hsa-mir-583 ; hsa-mir-6773-5p ; hsa-mir-6724-5p ; hsa-mir-4792 ; hsa-mir-296-5p ; hsa-mir-4687-3p ; hsa-mir-7974 ; hsa-mir-4312 ; hsa-mir-4641 ; hsa-mir-1233-3p ; hsa-mir-1225-3p ; hsa-mir-6774-5p ; hsa-mir-635 ; hsa-mir-6504-5p ; hsa-mir-3064-5p ; hsa-mir-3189-3p ; hsa-mir-4726-3p ; hsa-mir-125a-3p ; hsa-mir-4712-3p ; hsa-mir-598-3p ; hsa-mir-30d-5p ; hsa-mir-30e-5p ; hsa-mir-30c-5p ; hsa-mir-30b-5p ; hsa-mir-30a-5p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-195-5p ; hsa-mir-15a-5p

Nearest miRNA

hsa-mir-101-2/Upstream/47785; hsa-let-7a-1/Downstream/311319;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/79773, chr9-CpG: 126/Downstream/10152

Upstream sequence

AGTCACTGAAATCACTAAGTCTAAAATCATTCCATCATTTATGCAATTCAGTGGGCTTCTGAATCTACAAGAGTCTACAAAAGATGCAGGCACATGGTGG

Downstream sequence

ATGACTACAAGGACAGAACTGGCAATTCATATTTGCAGACTTTGGGCTATTGTAACAACTTATTTTTATCCAACATAATTTAAAAGCCTTTCTTCATTAG