Basic Information
VIS ID
TVIS44017079
Fusion event
HTLV-1-LOC107987065 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
38351966/38351969 (Hg38)
End
38351966/38351969 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107987065
Nearest miRNA
hsa-mir-101-2/Upstream/1458438; hsa-let-7a-1/Downstream/2577041;
Nearest TSS
ENST00000422679/Upstream/282758; ENST00000422554/Downstream/8458;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/110386, chr9-CpG: 54/Downstream/40543
Nearby gene
ALDH1B1(+40695) ;
Upstream sequence
aaaTAGTACTAGGCTGAAGGTATGGCAGAAGCCAATTTGGTCATCTTCTCAGCTCCCTTTCCTTGTAATCTTGCAGTCCTGCCCACAAGGATGGGCTGTC
Downstream sequence
AGCTGCCATGTGTTAGAAGCTGAGCTGAccctcttggctacaggtgatggcaccagaagtaagcacctgacccaagatgagccCGTTAGAGCCCATTCTT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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