Basic Information
VIS ID
TVIS44017099
Fusion event
HTLV-1-LOC107987087 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.32
Reference genome
GRCh37/hg19
Start
85292479/82677564 (Hg38)
End
85292479/82677564 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107987087
Nearest miRNA
hsa-mir-101-2/Upstream/11867480; hsa-let-7a-1/Downstream/1292184;
Nearest TSS
ENST00000422679/Upstream/225908; ENST00000416473/Downstream/385564;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/987478, chr9-CpG: 137/Downstream/384536
Nearby gene
RASEF(-302021) ;
Upstream sequence
gggtcctgaaggcagtggtaaggggatgttctgccaacaggcagaacttccaaacaatgcactgattattcatttttgcctggaataagatagaacaagg
Downstream sequence
tatagaaccaaactgatgaaaggtaagtgactaatggtctggttggaatgccagggacttgaaggaataccacttaaaaattggtaacaagaaggtctga
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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