Basic Information
VIS ID
TVIS44017162
Fusion event
HTLV-1-FRMD4A integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p13
Reference genome
GRCh37/hg19
Start
13700875/13658875 (Hg38)
End
13700875/13658875 (Hg38)
Orient
-
Location type
Intronic
Target gene
FRMD4A
miRNAs that regulate target gene
hsa-mir-423-3p ; hsa-mir-218-5p ; hsa-mir-34a-5p
Nearest miRNA
hsa-mir-3155a/Upstream/933522; hsa-mir-107/Downstream/724325;
Nearest TSS
ENST00000439456/Upstream/1752; ENST00000609756/Downstream/16771;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/1335, chr10-CpG: 86/Downstream/232607
Upstream sequence
ggaggctgaggcaggagaatcgcttgaacacgggaggcagaggttgcagcgagccaagatcgcgccactgtactccagcctgggtgacagagcaagactc
Downstream sequence
catctcaaaaaaaaaaaaaaaaaaagaaaCAGAAGGTGTGATTCACTGAAGCCTCATTTTTGCCTGGCTCTTTTGCTCTTTATGAATTTACATTTTGAGG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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