Basic Information
VIS ID
TVIS44017176
Fusion event
HTLV-1-chr10 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p15.3
Reference genome
GRCh37/hg19
Start
2945811/2903619 (Hg38)
End
2945811/2903619 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-5699/Upstream/827530; hsa-mir-107/Downstream/1087541;
Nearest TSS
ENST00000439456/Upstream/401816; ENST00000439575/Downstream/106912;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/130342, chr10-CpG: 298/Downstream/162839
Nearby gene
PFKP(+163901) ;
Upstream sequence
cctagtgcggtttcttccccgccctactctcagctgatgactgtggctccgacctcactgagaagtgggagccattgggagaactgctcagtgccctccc
Downstream sequence
cacatccacagcctcccagcgtgtccctgggctctgtccctcatgctatgggtgtgttcctcatgtttccaagccaaggacaactccgcccacctctgta
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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