Basic Information
VIS ID
TVIS44017220
Fusion event
HTLV-1-chr10 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p15.3
Reference genome
GRCh37/hg19
Start
746253/700313 (Hg38)
End
746253/700313 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-5699/Upstream/58535; hsa-mir-107/Downstream/1375706;
Nearest TSS
ENST00000439456/Upstream/10645; ENST00000412695/Downstream/43679;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/2774, chr10-CpG: 47/Downstream/26040
Nearby gene
DIP2C(-10645) ;
Upstream sequence
tgtggtgtatgtgcatgagcatgcactgtgtggtgtgtgtgcgtgagcgtgcactgtgtggtgtgtgtgcatgcatgagtgtgcacctgtgtgtgctgtg
Downstream sequence
tgtgcatgcatgtgtgtgcactgtgtggtgtgtgtgcatgagcatgcactgtgtgtggtgtgtgtgcatgcatgagcgtgcaactgtgtgtggtgtgtgt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate