Basic Information
VIS ID
TVIS44017222
Fusion event
HTLV-1-chr10 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p15.3
Reference genome
GRCh37/hg19
Start
769714/723774 (Hg38)
End
769714/723774 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-5699/Upstream/81996; hsa-mir-107/Downstream/1352245;
Nearest TSS
ENST00000439456/Upstream/34106; ENST00000412695/Downstream/20218;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/26235, chr10-CpG: 47/Downstream/2579
Nearby gene
DIP2C(-34106) ;
Upstream sequence
TGTGACATGGATAGAGTACATGTCAGGGGTATCACTGTGTGGGAAAAGGTCACACCATCATCACCACGCCCGGCGTCATGTGACAGGGATACAGTACGTG
Downstream sequence
TCAGGGGTTTCACTGTGTGGGAAAAGGTCACACCATCATCACCACGCCCGGCGTCATGTGACAGGGATACAGTATGTGTCAGGGGTTTCACTGTGTGGGA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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