Basic Information
VIS ID
TVIS44017260
Fusion event
HTLV-1-MUC6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.5
Reference genome
GRCh37/hg19
Start
1032340/1032340 (Hg38)
End
1032340/1032340 (Hg38)
Orient
-
Location type
Intronic
Target gene
MUC6
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-210/Upstream/464142; hsa-let-7a-2/Downstream/224265;
Nearest TSS
ENST00000527297/Upstream/11606; ENST00000534584/Downstream/869;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/339, chr11-CpG: 22/Downstream/744
Upstream sequence
TGTGGGCATGTGCACACACgtgtgtgtgggtacacgtatgtgtgttgtgtgtgtgcacgtgtgtgcacgtatgtgcgtgtctcgggtgtgtgcatacgtg
Downstream sequence
tcaggtgtgtccatgtgtgcattgtgggtgtgtgtgtgttggagggctgtgtaggcgtgtgagatatacacctgcatgtgtgttgggtgtgtgtgattgt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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