Basic Information
VIS ID
TVIS44017316
Fusion event
HTLV-1-LOC102723370 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
21905142/21883596 (Hg38)
End
21905142/21883596 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC102723370
Nearest miRNA
hsa-mir-210/Upstream/2123513; hsa-let-7a-2/Downstream/1535509;
Nearest TSS
ENST00000527297/Upstream/599859; ENST00000530837/Downstream/229852;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1213297, chr11-CpG: 88/Downstream/309030
Nearby gene
NELL1(+307913) ;
Upstream sequence
tgagagcgaagctgtaataaaatgtctcctagcaaagaaaagcccaggacttaatgacgtcagtgctgaattttaccaaacatttaaagaataagtaata
Downstream sequence
ctaattctactcaaactactctaaaaaatagaagaagagggaatatttctatacttattctatgaggccactattaccctgataccagaatcacacatgg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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