Basic Information
VIS ID
TVIS44017318
Fusion event
HTLV-1-chr11 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
23038246/23016700 (Hg38)
End
23038246/23016700 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-210/Upstream/3256617; hsa-let-7a-2/Downstream/402405;
Nearest TSS
ENST00000527297/Upstream/156274; ENST00000530576/Downstream/148200;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/186862, chr11-CpG: 27/Downstream/388706
Nearby gene
CCDC179(No orient, 156274)
Upstream sequence
GTTAAAGCTAAAGAGGTAGATATCAGACTTGCGTTCGTTATCTTCTTGATCTGAACATGCTTGACACTTTTTCTATTCTTCTGGGCAATTTAAACAAATG
Downstream sequence
AGGCTGATTCTCTTGGTGACACTGCTCTTATGGGTGAGGTCCACACAAACCATAGAACATGAAGGGCCCATTTGGACAGCTATAGGCTTGGGTGAGATTT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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