Basic Information
VIS ID
TVIS44017353
Fusion event
HTLV-1-TSPAN18 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
44936475/44914924 (Hg38)
End
44936475/44914924 (Hg38)
Orient
+
Location type
Intronic
Target gene
TSPAN18
miRNAs that regulate target gene
hsa-mir-597-5p ; hsa-mir-92a-3p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-129-2/Upstream/1333441; hsa-let-7a-2/Downstream/776780;
Nearest TSS
ENST00000527297/Upstream/5401; ENST00000520245/Downstream/2658;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/186713, chr11-CpG: 174/Downstream/34573
Upstream sequence
aggactcagcaggtagctattGCTATTTTTCCAGAGCCGCCCACACCAGCACTTGTCTTCGGGAAGGATGTGCTTCCTCTGGGCTCTAAGTAACCATCTG
Downstream sequence
AGCAGCTCTCATGTCATGCCGGTCTTGCGAGAAGCACCGCACCTGCATTACCTCGTGGAAGCCATGCGCAGTCATCCTGGATGGCACACACACATCCCAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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