Basic Information
VIS ID
TVIS44017375
Fusion event
HTLV-1-APBB1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.4
Reference genome
GRCh37/hg19
Start
6437793/6416563 (Hg38)
End
6437793/6416563 (Hg38)
Orient
-
Location type
Intronic
Target gene
APBB1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-148b-3p ; hsa-mir-331-3p
Nearest miRNA
hsa-mir-210/Upstream/2560422; hsa-let-7a-2/Downstream/818203;
Nearest TSS
ENST00000527297/Upstream/10903; ENST00000528908/Downstream/2507;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/25880, chr11-CpG: 103/Downstream/2070
Upstream sequence
aacatctccacttggatgtctcaagctaatagacccactcatgtttcccactcccacacactaactggtcctctttcaggatcccggctcatggaatgat
Downstream sequence
agaatccatcctattctgtgaatctgaagtaggggtacatcttgacatgtccttctcctgcacttgctatgttcaatccatctctaggtactgatgattt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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