VISDB Viral Integration Site DataBase

VIS ID

TVIS44017377

Fusion event

HTLV-1-ATG2A integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr11

Cytoband

q13.1

Reference genome

Start

End

64662906/64895434 (Hg38)

Orient

+

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-3175 ; hsa-mir-4252 ; hsa-mir-4793-3p ; hsa-mir-1273g-3p ; hsa-mir-6849-3p ; hsa-mir-7703 ; hsa-mir-106b-5p ; hsa-mir-20a-5p ; hsa-mir-3692-3p ; hsa-mir-5095 ; hsa-mir-7151-3p ; hsa-mir-4653-3p ; hsa-mir-6798-5p ; hsa-mir-4717-3p ; hsa-mir-6805-5p ; hsa-mir-6514-5p ; hsa-mir-4802-3p ; hsa-mir-4697-5p ; hsa-mir-4488 ; hsa-mir-1237-5p ; hsa-mir-6816-5p ; hsa-mir-3196 ; hsa-mir-3180-3p ; hsa-mir-3180 ; hsa-mir-198 ; hsa-mir-6808-3p ; hsa-mir-7150 ; hsa-mir-7973 ; hsa-mir-885-3p ; hsa-mir-139-3p ; hsa-mir-3688-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-4758-3p ; hsa-mir-4286 ; hsa-mir-488-5p ; hsa-mir-4323 ; hsa-mir-550b-2-5p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-4276 ; hsa-mir-1227-3p ; hsa-mir-4504 ; hsa-mir-766-3p ; hsa-mir-5190 ; hsa-mir-508-5p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-93-5p ; hsa-mir-17-5p ; hsa-mir-1193 ; hsa-mir-1233-3p ; hsa-mir-1276 ; hsa-mir-3064-5p ; hsa-mir-370-5p ; hsa-mir-376a-3p ; hsa-mir-376b-3p ; hsa-mir-4687-3p ; hsa-mir-4760-3p ; hsa-mir-6501-3p ; hsa-mir-6504-5p ; hsa-mir-6801-5p ; hsa-mir-7974 ; hsa-mir-892b ; hsa-mir-146b-3p ; hsa-mir-1914-5p ; hsa-mir-6779-3p

Nearest miRNA

hsa-mir-10392/Upstream/3995; hsa-let-7a-2/Downstream/2929;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/26, chr11-CpG: 31/Downstream/21693

Upstream sequence

GGCAGGCTGCTGGCCCCTGCGCAGCCTCCGCGCAGAGCGCTTATCCTGCAGGGAGCGGGAGACGGGGGCTGCCGGGGACAGGATGTCATACACGGTCTCA

Downstream sequence

GCTGTGGCCTGGGGGACATGGGAGCACTGGATGAGGACAGCTGGCTGGGGCACACGTCAGCCCCAGGCCCCCAGGACAGTCTGAGACCCCACCAGCCCTC