Basic Information
VIS ID
TVIS44017392
Fusion event
HTLV-1-C2CD3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.4
Reference genome
GRCh37/hg19
Start
73849444/74138399 (Hg38)
End
73849444/74138399 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA11H
Target gene
C2CD3
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-10392/Upstream/1354807; hsa-let-7a-2/Downstream/260838;
Nearest TSS
ENST00000527297/Upstream/4769; ENST00000542710/Downstream/32469;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/154642, chr11-CpG: 58/Downstream/32455
Upstream sequence
AACGTTCTCACTAAGACTAAGAGTTTTCAGAATGTGAAATGGATTTTGTACTAGTCTCCATACAGTGGGATAAATAAATGCTGATCACGAGACAAAAACC
Downstream sequence
TTACCTGCCTTGAATTATTTGGGACAAAGTAAGGACTAATCCTTTTCTATGATAAAGGTTTTCCCCTCATATCCAATTCCTTTTAAACGATTCCTTCCCC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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