Basic Information
VIS ID
TVIS44017404
Fusion event
HTLV-1-chr11 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.4
Reference genome
GRCh37/hg19
Start
8026106/8004559 (Hg38)
End
8026106/8004559 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-210/Upstream/769722; hsa-let-7a-2/Downstream/1085753;
Nearest TSS
ENST00000527297/Upstream/9545; ENST00000534099/Downstream/11930;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/330105, chr11-CpG: 130/Downstream/14303
Nearby gene
CASC23(No orient, 6719)
Upstream sequence
CAGCTGGTGGGCGGAGGGAGGGATTGAGGCCCCTTTCCTCTTAGCGGCAGCTCAGGAGGGATCCCAGGATCTGTGCTTCCATCTGGATCAGGTGAAGCAC
Downstream sequence
ACACAGTGAGACTGTCTTTTTGCTCTCTGCAGGGGTGGGCACAGGATCCCTCTGTTCCTGTTGCTAAATTGGTCTGCTGGAGGACTGCACTATATTCTGA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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