Basic Information
VIS ID
TVIS44017410
Fusion event
HTLV-1-STK33 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.4
Reference genome
GRCh37/hg19
Start
8447913/8426366 (Hg38)
End
8447913/8426366 (Hg38)
Orient
-
Location type
Intronic
Target gene
STK33
miRNAs that regulate target gene
hsa-mir-183-5p ; hsa-mir-103a-3p ; hsa-mir-16-5p ; hsa-mir-877-3p ; hsa-mir-10b-5p
Nearest miRNA
hsa-mir-210/Upstream/1191529; hsa-let-7a-2/Downstream/663946;
Nearest TSS
ENST00000527297/Upstream/157650; ENST00000534169/Downstream/26540;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/157591, chr11-CpG: 55/Downstream/167484
Upstream sequence
agccaaactccgtattgttctgccggtggatggcttgcaggcctgctggccctatgccgcggagtgactctcaatgtccagctgcttgtgcgtctgcctg
Downstream sequence
ctagggtctcgggttttttacaggcccaggatgggggcatgtcaggcaggggtggtcttggaaaatgcaacatttaggcaggaaaacagaaatgcctgtc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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