Basic Information
VIS ID
TVIS44017438
Fusion event
HTLV-1-chr12 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
108119407/107725630 (Hg38)
End
108119407/107725630 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7i/Upstream/3133914; hsa-mir-1178/Downstream/910180;
Nearest TSS
ENST00000382841/Upstream/32947; ENST00000546829/Downstream/10925;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/39514, chr12-CpG: 79/Downstream/34987
Nearby gene
PRDM4(-7236) ;
Nearest cancer related gene
PRDM4(TSG, -7236) ;
Upstream sequence
cacatacaccctcccaagactaaaccaggaagaagttgaatctctgaatagaccagtaacaggctctgaaattgaggcaataattaatagcttaccaacc
Downstream sequence
aaaaaaagtccaggaccagacggattcacagccgatttctaccagaggtacaaggaggagctggtaccattcttctgaaactattccaatcaatagaaaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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