Basic Information
VIS ID
TVIS44017458
Fusion event
HTLV-1-ABCB9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.31
Reference genome
GRCh37/hg19
Start
123433797/122949250 (Hg38)
End
123433797/122949250 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA12E
Target gene
ABCB9
miRNAs that regulate target gene
hsa-mir-210-3p ; hsa-mir-335-5p ; hsa-mir-26a-5p ; hsa-mir-31-5p ; hsa-mir-24-3p
Nearest miRNA
hsa-let-7i/Upstream/239826; hsa-mir-3612/Downstream/61417;
Nearest TSS
ENST00000382841/Upstream/679; ENST00000537966/Downstream/62;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/52903, chr12-CpG: 27/Downstream/10414
Upstream sequence
TGGCAGAGGGGGTAACTCCTCTTCCCTTCTAGGGAAATAACAACCTGGCTGGTGGCGGGCAGGAAAGCGCAGACACTTCTTACCTAAGTTGGACATTGTG
Downstream sequence
CTAagagctgtgtaaggaccccatggggtggctactatccgtgttcccattttacagacaagaaaacagaggatcagagaggtgaagttcgtgagtggag
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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