Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene132454324132196372132329349132277317132280986132277349132280900132275391132278329132284262132287144132282814132284606132282972132284004132274994132275610132322041132322278132323060132323266132282655132282804132313168132313292132325348
Basic Information
VIS ID
TVIS44017463
Fusion event
HTLV-1-GALNT9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.33
Reference genome
GRCh37/hg19
Start
132901934/132325348 (Hg38)
End
132901934/132325348 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA12E
Target gene
GALNT9
Nearest miRNA
hsa-let-7i/Upstream/4031170; hsa-mir-6763/Downstream/256649;
Nearest TSS
ENST00000382841/Upstream/38877; ENST00000537720/Downstream/3855;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/845, chr12-CpG: 118/Downstream/3515
Upstream sequence
AAACAAAACAATGAATTGTTTGGAGAAAAACCCTCTCGCTTGCtcactggacagatattcgtggagtgctatgttcacagtaccgccagaggccttgggc
Downstream sequence
atcagagccaggaccagacagacacagcctcgccctcagtggaCACGAGCGAGGTGTCACACAGTCATGGGGGGATGCATGAGGCACGTGGGAATTCCTG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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