Basic Information
VIS ID
TVIS44017484
Fusion event
HTLV-1-LOC102724618 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
32190264/32037330 (Hg38)
End
32190264/32037330 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC102724618
Nearest miRNA
hsa-mir-1244-3/Upstream/6163251; hsa-let-7i/Downstream/10286370;
Nearest TSS
ENST00000382841/Upstream/36955; ENST00000550207/Downstream/69505;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/77431, chr12-CpG: 92/Downstream/68985
Nearby gene
RESF1(No orient, 44221)
Upstream sequence
ccatcatgcccagctaattttcgttgttttggtttttggttttttgttttttgagacggagtctcactctgtcgcccaggctggtgtgcagtggcgtgat
Downstream sequence
ctcagctcattgcaacctccacctcccgggttcacgccattctcctggctcagcctcccaagtagctgggactacagatgcccgccactacgtccggcta
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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