VISDB Viral Integration Site DataBase

VIS ID

TVIS44017507

Fusion event

HTLV-1-TIMELESS integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr12

Cytoband

q13.3

Reference genome

Start

End

56839500/56445716 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-320b ; hsa-mir-877-3p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-324-5p ; hsa-mir-183-5p ; hsa-mir-548s ; hsa-mir-3926 ; hsa-mir-3190-5p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-6849-3p ; hsa-mir-6748-3p ; hsa-mir-3149 ; hsa-mir-3591-5p ; hsa-mir-5089-5p ; hsa-mir-620 ; hsa-mir-1270 ; hsa-mir-4460 ; hsa-mir-4727-3p ; hsa-mir-3167 ; hsa-mir-876-5p ; hsa-mir-4683 ; hsa-mir-1273f ; hsa-mir-6849-5p ; hsa-mir-3681-5p ; hsa-mir-6839-3p ; hsa-mir-4507 ; hsa-mir-3940-5p ; hsa-mir-5001-3p ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-6781-3p ; hsa-mir-2682-3p ; hsa-mir-6774-5p ; hsa-mir-635 ; hsa-mir-4772-3p ; hsa-mir-1304-3p ; hsa-mir-6890-3p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-4252 ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-1273g-3p ; hsa-mir-3940-3p ; hsa-mir-508-5p ; hsa-mir-1273e ; hsa-mir-1827 ; hsa-mir-219a-2-3p ; hsa-mir-3664-3p ; hsa-mir-4649-3p ; hsa-mir-4695-5p ; hsa-mir-4722-5p ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-940

Nearest miRNA

hsa-mir-1244-3/Upstream/2108402; hsa-let-7i/Downstream/748788;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/85177, chr12-CpG: 47/Downstream/3346

Upstream sequence

aatcccagctactcaggaggctgaggcaggagaatcgcttgaggcggaggttgcagtgagctgagatcgcaccactgcactccagcctgggcaacaagag

Downstream sequence

cgaaactctgtctcaaaaaaaaaaaaaagaaacctaggagtcaccttagctccatctcacttaacttccttaagttcttctatcagttgctgtctatcct