Basic Information
VIS ID
TVIS44017521
Fusion event
HTLV-1-chr12 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q15
Reference genome
GRCh37/hg19
Start
68200316/67806536 (Hg38)
End
68200316/67806536 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7i/Upstream/1555379; hsa-mir-1178/Downstream/1466621;
Nearest TSS
ENST00000382841/Upstream/77061; ENST00000545520/Downstream/122699;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/156440, chr12-CpG: 54/Downstream/525531
Upstream sequence
tggggtgtccaaatagagacttcctaaaggcagttgagtatatagaaaaggaattcaaggaagaggtgaaaacccaagacccatgtttgagaaacgttcc
Downstream sequence
catattgtttccatctgaaggaatgggcatggctgGAGTGGGGAAAATAGCCAGAACAGACCAAGTGTGGAATCCAGGACAGAAGATAAAATTGCAGAGT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate