Basic Information
VIS ID
TVIS44017548
Fusion event
HTLV-1-ANKS1B integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
99921478/99527700 (Hg38)
End
99921478/99527700 (Hg38)
Orient
+
Location type
Intronic
Target gene
ANKS1B
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-let-7i/Upstream/1532252; hsa-mir-1178/Downstream/662184;
Nearest TSS
ENST00000382841/Upstream/141403; ENST00000324341/Downstream/120053;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/632104, chr12-CpG: 85/Downstream/456765
Upstream sequence
tgaaatatacttggaaaaTACAGGAAGagtagttcaagagcatgagccctttaactggagtcagaatcccaactctgccttttttaacaaagttgccttg
Downstream sequence
gcaaagtcttacagtttcctcatctgcaaaattagaatagtaatagtatctgcttcaaggttttgttggtagttgtgaatgaaataataAAATCAATAAA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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