Basic Information
VIS ID
TVIS44017618
Fusion event
HTLV-1-LOC105370214 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
57233702/56659568 (Hg38)
End
57233702/56659568 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA13B
Target gene
LOC105370214
Nearest miRNA
hsa-mir-1297/Upstream/1485020; hsa-mir-1267/Downstream/4540230;
Nearest TSS
ENST00000623511/Upstream/1076044; ENST00000377931/Downstream/481350;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/3457358, chr13-CpG: 25/Downstream/481269
Nearby gene
PRR20D(+481350) ;
Upstream sequence
cttggttcctgcctgcacctctccctccacaccttcccacaaacagagggagctggctctggcctcagccagcccagagaggggctcccacagtgcagtg
Downstream sequence
gcaggctgaagggctcctcaagcacagccagagtgggcgctgaggccgaggatgcgcctagagtgagcgagggctgccagcacgctgtcacctctcacTC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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